Dr. Andre Leesment – PhD thesis on the acidity in biphasic systems and gas-phase

Last Friday, June 9th, 2023, Andre Leesment successfully defended his PhD thesis titled Quantitative studies of Brønsted acidity in biphasic systems and gas-phase. The opponent was Prof. Kiyohiko Sugano from the Ritsumeikan University, Japan.

Dr. Andre Leesment (on the right) after his PhD defence with his supervisor Prof. Ivo Leito (on the left).

Experiments for measuring acidity of medicines, catalysts, and other chemicals are almost always performed under monophasic conditions. However, many of them are lipophilic compounds, and in biphasic systems they prefer the nonpolar organic phase, where their properties are much different from their properties in an aqueous phase. Yet the interactions with the organic phase are completely ignored in a typical acidity measurement. It’s like seeing only half of the picture. Why is such an incomplete approach being used for something this important?

Until recently, there was no theoretical basis or experimental method to conduct measurements of acidity under more relevant conditions. Andre’s PhD thesis focuses on providing the tools to measure acidity, and by extension, many other properties of molecules in biphasic systems in a more realistic and accurate way. Hopefully, these tools lead to a more effective drug development, catalyst research, etc.

Congratulations to you, Andre!  

 

LC-MS Validation online course 7th run has finished!

On February 10, 2023 the on-line course (MOOC) LC-MS Method Validation offered by the University of Tartu finished successfully.

Eventually, altogether 903 people registered from 104 countries. Less than half, 376 participants actually started the course (i.e. tried at least one graded test at least once) and out of them 218 successfully completed the course. The overall completion rate was 24%. The completion rate of participants who started the studies was 58%. The completion rates of active participants (i.e. who started the course) seems to have stabilized not too far from 60%, which can be considered good. However, the overall completion rate is still in decline (although there is no statistically significant difference between the 25% and 24% of the last two editions). In any case, there is some food for thought for us on how we could improve the overall completion rate…

At the same time, those participants who actually took part in the course, were very active and asked lots of questions. The questions were often very much to the point and addressed things that are really important to analysts in their everyday work. The course has several forums (general and by topic) and during the course period the overall number of forum posts was above 400 (!) (overall number of posts, both from participants and from teachers) and the forums are still active and posts are still coming in.

This active participation made teaching of this MOOC a great experience also for us, the teachers. The discussion threads gave a lot of added value to the course and some of them triggered making important modifications to the course materials, even during the course. Importantly, thanks to active participants, several mistakes were found and corrected in the course materials. As a result, the overall quality of the course improved.

We want to thank all participants for helping to make this course a success!

We plan to repeat this course again in Autumn 2023.

LC-MS Method Validation web course: 904 participants from 104 countries!

On Tuesday, November 22, 2022 the web course LC-MS Method Validation was launched for the fifth time as a MOOC (Massive Online Open Course). There are 904 registered participants (the largest number ever in this course) from 104 countries, ranging from Sudan to Suriname and from Malaysia to Macedonia. Image on the left shows the countries where the participants come from.

This is a practice-oriented on-line course on validation of analytical methods, specifically using LC-MS as technique. The course introduces the main concepts and mathematical apparatus of validation, covers the most important method performance parameters and ways of estimating them. The LC-MS validation course is delivered by a team of 7 teachers, each with their own specific area of competence. This way it is expected to offer the best possible knowledge in all the different subtopics of analytical method validation.

The full set of course materials is accessible from the web page https://sisu.ut.ee/lcms_method_validation/. The course materials include videos, schemes, calculation files and numerous self-tests (among them also full-fledged calculation exercises). In order to pass the course, the registered participants have to take all tests and get higher than 50% score from each of them. These tests are available to registered participants via the Moodle e-learning platform. Participants who successfully pass the course will get a certificate from the University of Tartu.

From anion receptor design to real sensor prototypes – PhD thesis of Alo Rüütel

On the 18th of November, 2022, Alo Rüütel successfully defended his PhD thesis titled Design principles of synthetic molecular receptors for anion-selective electrodes.

Alo’s thesis starts by expanding a fundamental question asked by Otto S. Wolfbeis back in 2013: when so much research is done on binding anions with various molecular receptors, why do we see so few real sensors that could be used in real-life applications?

 

 

In response to this, Alo has outlined a sensor development strategy flowchart and identified a “dead zone” – space between receptor evaluation and prototype fabrication stages – on the sensor development pathway where the research most often gets stuck. Alo’s dissertation connects the research fields of receptor design and sensor preparation. The thesis demonstrates the challenges of creating new ion-selective electrodes for carboxylate sensing. This process is accompanied by several scientific challenges at the fundamental level of supramolecular chemistry. To address these problems, influencing factors are explored, such as improving binding, lipophilicity, biphasic binding environments etc. A big outcome of the thesis was a compilation of accurate binding constants of one hundred (!) anion receptors. Perhaps the most tangible result of the thesis were real sensor prototypes, capable of sensing carboxylate anions (e.g. benzoate).

Alo’s performance at the defence was one of the best we have seen. He single-handedly and seemingly effortlessly answered all the (numerous!) questions from the opponent, as well as from the committee.

Please accept our big congratulations, Alo!

LC-MS Method Validation Course 2022-2023: One week left until start!

In one week, on Nov 22, 2022 the online course LC-MS Method Validation will start!

Registration is still open (here). The course will run as a Massive Open On-line Course (MOOC) during Nov 22, 2022 – Feb 03, 2023.

This is a practice-oriented on-line course on validation of analytical methods, specifically using liquid chromatography-mass spectrometry (LC-MS) as technique, mostly (but not limited to) using the electrospray (ESI) ion source. The course will also be of interest to chromatography practitioners using other detector types. The course introduces the main concepts and mathematical apparatus of validation, covers the most important method performance parameters and ways of estimating them. More information about the course can be found in Course introduction page.

Participation in the course is free of charge. Receiving digital certificate (in the case of successful completion) is also free of charge. Printed certificate (to be sent by post) is available for a fee of 60 EUR. Registration is possible until the start of the course. The course material is available from the above address all the time and can be used via web by anyone who wishes to improve the knowledge and skills in analytical method validation (especially when using LC-ESI-MS).

Acidities (pKa values) of Fluorocompounds at ESFC 2022

On Aug 15, 2022 Ivo Leito gave a presentation Acidities of Fluorocompounds at the 20th European Symposium on Fluorine Chemistry taking place in Berlin (Germany) during Aug 12-19, 2022.

Fluorination, especially polyfluorination is a powerful means for acidifying molecules. So, many fluorine-containing compounds are acidic (Scheme on the left) and some are remarkably strong acids, e.g. the well-known trifluoromethanesulfonic acid CF3SO3H or the bis(trifluoromethane)sulfonimide (CF3SO2)2NH.

The first part of the presentation gave a brief overview of the acidity of molecules, expressed as pKa values, acidity scales (pKa scales) on the example of the acetonitrile pKa scale and discussed two important pKa measurement methods: UV-Vis and NMR spectrometry.

The second part of the presentation specifically addressed the relative pKa measurement method based on 19F NMR for accurate measurement of pKa values of fluorocompounds (Scheme on the right). The presentation demonstrated that 19F NMR has a number of advantages, compared to most other methods: accurate concentrations of acids not needed, method is tolerant to impurities in compounds, several compounds can be measured simultaneously, solvent or titrant signals do not hinder measurements and deuterated solvents are not needed. Using multiple relative measurements against several reference compounds with known acidities, it is possible to obtain highly reliable pKa values.

LC-MS Validation online course 6th run has finished!

On February 11, 2022 the on-line course (MOOC) LC-MS Method Validation offered by the University of Tartu finished successfully.

Eventually, altogether 850 people registered from 97 countries. Less than half, 380 participants actually started the course (i.e. tried at least one graded test at least once) and out of them 209 successfully completed the course. The overall completion rate was 25%. The completion rate of participants who started the studies was 55%. These completion rates are lower than we usually have. So, here is some food for thought for us on how we could improve the success rate…

At the same time, those participants who actually took part in the course, were very active and asked lots of questions. The questions were often very much to the point and addressed things that are really important to analysts in their everyday work. The course has several forums (general and by topic) and during the course period the overall number of forum posts was above 200 (!) (overall number of posts, both from participants and from teachers) and the forums are still active and posts are still coming in.

This active participation made teaching of this MOOC a great experience also for us, the teachers. The discussion threads gave a lot of added value to the course and some of them triggered making important modifications to the course materials, even during the course.

We want to thank all participants for helping to make this course a success!

We plan to repeat this course again in Autumn 2022.

The 2021 Nobel Chemistry Prize

 

Selleaastased keemianobelistid Benjamin List ja David MacMillan.

We were very pleased to learn today that the the Nobel Prize in Chemistry 2021 was awarded to Benjamin List (Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany) and David W.C. MacMillan (Princeton University, USA) “for the development of asymmetric organocatalysis”!

The List group is world-famous for developing superacidic organocatalysts, enabling a very wide range of challenging transformations. We are happy that there is also a tiny contribution from our group to prof. List’s research: the acidities (expressed as pKa values in acetonitrile of 1,2-dichloroethane) of some of their acid catalysts (1,1,3,3-Tetratriflylpropene and some chiral superacidic imides) have been measured in our lab. Recently we were happy to host people from the List group in our lab and they learned how to carry out pKa measurements in nonaqueous solutions. The collaboration will continue.

Big congratulations to prof. List and to prof. MacMillan!

(Photo: The Nobel Prize committee)

Design of Novel Uncharged Organic Superbases: Merging Basicity and Functionality

Emerging organosuperbase families
Examples of emerging organosuperbase families

In a recent account Design of Novel Uncharged Organic Superbases: Merging Basicity and Functionality. Acc. Chem. Res. 2021, 54, 3108-3123 four groups doing research at the forefront of superbase chemistry – IOCB (Czech Republic), Rudjer Boskovic Institute (Croatia), Philipps-Universität Marburg (Germany) and our group at University of Tartu – have joined forces in charting the direction for further developments of the whole organosuperbases area. What synthetic chemists need, are “non-ionic, metal-free superbases as chemically stable neutral organic compounds of moderate molecular weight, with intrinsically high thermodynamic basicity, adaptable kinetic basicity, and weak or tunable nucleophilicity at their basicity centres”. Such superbases would be are useful, being able to catalyze a number of reactions that are impossible otherwise.

The account demonstrates that just trying to achieve ever higher basicity is not the main challenge. Very high basicities have been demonstrated, both computationally and experimentally. Instead, the combination of high basicity with moderate molecular weight, ease of synthesis and stability is the key issue.

The account starts with the state of the art of neutral organic superbase research, theirs synthesis and basicity measurements, as well as computations and thereafter presents several examples of emerging organosuperbase families (see the Figure on the left) and discusses their synthesis, basicity and demonstrated, as well as potential applications.

Dr. Eliise Tammekivi – PhD thesis on the quantitative analysis of oils

Last Friday, on August 27, 2021, Eliise Tammekivi successfully defended her PhD thesis titled Derivatization and quantitative gas-chromatographic analysis of oils.

In the PhD thesis by Eliise, four derivatization procedures that are widely used for the analysis of oils in cultural heritage or archaeology were compared based on quantitative gas-chromatographic (GC) analysis. It was seen that the TMTFTH derivatization was the most suitable one for the GC analysis of fresh oils. An in-depth uncertainty estimation was performed for one of the derivatization procedures using the ISO GUM approach and the Monte Carlo method. Another one of the improved procedures was applied for the analysis of self-made artificially aged paint samples that had varying pigment to linseed oil ratio to see if the pigment concentration had an effect on the drying of the paint samples.

Additionally, small samples from two paint case study samples relevant to the history of Estonia – crucifix from Karja church and cupboard from Ruhnu island – were analyzed to obtain information about the materials in the paint samples. Finally, the improved quantitative method was used to quantify fatty acids present in yeast cells. 

Congratulations to you, Eliise!