How to make maximum use of the available pKa data in non-aqueous solvents?

At the recent Balticum Organicum Syntheticum conference Ivo Leito made a presentation titled How to make maximum use of the available pKa data in non-aqueous solvents? (Photo on the left)

The presentation started with how acid and base strengths, typically expressed as pKa values (acids) or pKaH values (bases), depend on solvation of the proton, as well as of the neutral and ionized forms of the acid/base. Every solvent has different solvation properties. Thus, the pKa values for the same acid/base in different solvents are also different (often dramatically different).

In principle, whenever using pKa values for predicting or rationalizing chemical processes, the pKa values determined in the same solvent should be used. In some solvents, e.g. water, DMSO or acetonitrile large bodies of pKa data exist, while in most solvents either very few pKa values are available or none at all. This leads to the frequent need of estimating pKa values in one solvent from the data in other solvent(s) (Picture on the right). An additional consideration is the (often problematic) quality of pKa data in the literature.

When estimating pKa values in one solvent based on the data in another solvent it is important to clearly define the aim. Is it needed to have the absolute pKa value or is it rather necessary to have the acidity/basicity differences (or acidity/basicity order) within a set of compounds? Perhaps the question is just “can base B deprotonate acid A in solvent S”? If absolute pKa value is needed then what accuracy is necessary? Depending on the aim, there are different possibilities of estimating pKa and pKaH values in a solvent on the basis of data in other solvents.

The presentation gave an overview to what extent such estimates can be usefully done, highlighting both successes and failures, as well as how to recognize clearly erroneous pKa data. The presentation also highlighted the IUPAC project Critical compilation of acid pKa values in polar aprotic solvents that is nearing completion. The critically evaluated pKa data of acids in dimethyl sulfoxide, acetonitrile, N,N-dimethylformamide, pyridine, acetone, propylene carbonate, tetrahydrofuran are available from Ivo Leito on request.

The presentation turned out to be highly interesting for the participants, receiving a large amount of questions, which extended well into the coffee break!

(This research was supported by grant PRG690 from the Estonian Research Council)

You are what you eat – ERC grant goes to Ester Oras!

We are delighted to announce that the prestigious ERC Starting Grant was awarded to a member of our group and head of the Archemy team  – Associate Professor in Analytical Chemistry and Archaeology Ester Oras!

Ester Oras. Photo: Andres Tennus

The European Research Council (ERC) Starting Grant is awarded to early-stage researchers to carry out their outstanding ideas over the next five years. Ester’s project aims to explore our distant ancestor’s identities through diet by conducting biomolecular analysis on at least 150 burial finds, uncovering details of life from a thousand years ago.

Food is a crucial element in understanding identity, revealing details about social roles, status, and even how the person spent their childhood. By examining bones, teeth, and food residues from pottery, the team can reconstruct how a person’s diet evolved over their lifetime. This will help answer questions like whether an individual ate foods typical of their gender or social class and if they grew up in the area where they were buried.

During the project, various burial finds will be analysed, focusing primarily on sites in Estonia from the years 1000–1400. Using advanced techniques, the team will analyse various molecules, including fats, proteins, and DNA, to uncover specific details about what ancient people ate. This comprehensive approach could even identify not only if the person ate fish but also whether it was cod or herring, offering a deeper look into the lives of our ancestors.

What makes this research groundbreaking is its combination of modern scientific methods with traditional archaeology. Machine learning will be used to integrate the results from various analyses, helping to identify connections between individuals and communities. The project marks a significant step forward for archaeological research, offering new perspectives on ancient identities and social structures.

Read the original blog post here.

Congratulations from all of us, Ester!

Unlocking the potential of phosphanes – a new approach to predicting their electronic and steric properties

We are excited to share our latest publication titled, “pKaH values and θH angles of phosphanes to predict their electronic and steric parameters” (Dalton Trans., 2024, 53, 14226-14236. https://dx.doi.org/10.1039/d4dt01430h).

In this study, we delve into the fascinating world of phosphanes – a versatile class of organic bases that play a crucial role in a wide array of chemical applications. Phosphanes are known for their incredibly diverse range of basicities, with pKaH values spanning over 30 orders of magnitude. One of the key insights from our research is that pKaH values can be a valuable alternative to Tolman electronic parameters (TEP values) for assessing the electronic properties of phosphanes. This finding opens up new possibilities for researchers to evaluate phosphanes without the need for the time-consuming preparation or calculation of metal-ligand complexes.

In addition to electronic properties, we also propose new geometric parameters to assess the steric properties of phosphanes – the θH angles, which have the advantage of being accessible by simple computations. Together, the pKa values and θH angles provide a straightforward approach to understand and predict the behavior of phosphanes in various chemical environments and processes.

Our study combines computational and experimental findings to offer a fresh perspective on how phosphanes can be analyzed and utilized, and we believe it will be a valuable resource for researchers working with these compounds. We invite you to read the full article to explore the detailed findings and implications of our work.

 

ASMS 2024 – Conference on mass spectrometry and allied topics

From June 2 to June 6, 2024, Signe Vahur and Anu Teearu-Ojakäär attended the 72nd ASMS conference on mass spectrometry and allied topics at Anaheim Convention Center (Anaheim, USA).

Signe and Anu at ASMS

This year, the conference hosted almost 6800 attendees and 183 companies. During the four days there were 384 oral presentations that ran in 8 parallel sessions and 3288 poster presentations (more than 800 posters per day) on wide variety of topics related to mass spectrometry – developments in instrumentation, analysis of complex and problematic samples, using AI and software solutions to improve measurements, data handling, etc. In addition, there were 50 evening workshops and 49 breakfast seminars. From Monday to Wednesday evening, 15 daily corporate hospitality suits were hosted by some of the companies (e.g., Bruker, Agilent Technologies, Shimadzu, Thermo Scientific, etc.).

Anu and Signe in front of their poster

At the conference, Signe and Anu presented their poster “APCI-MS for the analysis of cultural heritage materials” during the Thursday (June 6) poster session. On Monday evening (June 3), Anu gave a 3-minute Flash talk at the evening workshop “Art, Museums, and Archaeology” for an audience of approximately 160 attendees.

Anu giving a Flash presentation

The 72nd ASMS conference was a great experience by meeting old colleagues and fellow MS enthusiasts, making new connections, having great and fruitful discussions and networking opportunities. Thank you to the organisers of the conference for delivering yet another high-level event!

From anion-receptor binding constants to a working ion-selective electrode – PhD dissertation of Kerli Martin

On 7th of August, 2024, Kerli Martin successfully defended her PhD dissertation titled Recognition of carboxylates by synthetic receptors – from structure-affinity studies to solid-contact anion-selective electrode prototyping.

This dissertation begins with the observation that while polymer membrane ion-selective electrodes (ISEs) have been well known and widely used for decades to detect small cations, determining organic anions with ISEs remains a challenge, essentially without a solution. The dissertation presents a journey starting with the study of the interactions between small monocarboxylates and numerous anion receptors – potential new ionophores.

By measuring the binding constants of eight carboxylates (formate, acetate, pivalate, lactate, ibuprofen, ketoprofen, glucuronate, and benzoate) to 44 synthetic receptor molecules using nuclear magnetic resonance, Kerli constructed eight binding affinity scales where all the binding affinities are comparable. These results were then assembled into a large overall map of the receptor-anion binding constants (Figure on the right). The results revealed that the selected synthetic hydrogen-bond donor receptors can distinguish between carboxylates with different structures.

As a result of this binding study, a 1,3-bis(carbazolyl)urea derivative (receptor 13 in the Figure on the right) was selected as the hydrogen-bonding ionophore to create prototypes of ion-selective electrodes that can detect acetate. The electrodes built by Kerli displayed a unique selectivity pattern for different anions. The addition of this ionophore to the electrode membrane significantly (by up to several orders of magnitude) reduced the interference from other common ions such as chloride, bromide and nitrate. Kerli’s work is an important step forward in designing ionophores that can specifically bind carboxylates and building sensitive and selective ion-selective electrodes for different anions.

The defence procedure itself was quite a battle for Kerli! It started with the detailed questioning by the opponent prof. Claudia Caltagirone (University of Cagliari, Italy) on all the aspects of the thesis. Particularly interesting and difficult were some of her highly technical questions regarding the fluorescence measurement of binding affinities. Then there was a long string of questions from the defence committee members. The topics of Kerli’s thesis ranged from receptor-anion binding to computational chemistry and from materials science to hard-core electrochemistry. Thus, most committee members found something familiar and worth asking about. Kerli managed nicely with all the questions and left a very good impression on everybody in the room!

Please accept our warm congratulations, Kerli!

Measurement uncertainty online course 11th run has successfully finished!

On May 09, 2024 the on-line course (MOOC) Estimation of measurement uncertainty in chemical analysis offered by the University of Tartu finished successfully.

Eventually altogether 1047 people registered from 104 countries. 655 participants actually started the course (i.e., tried at least one graded test at least once). The overall completion rate was 38%. The participation rate was this year 63%. The completion rate of the participants who started the studies was 61%, with 398 successfully finished participants. This result is quite stable during the 11 runs, showing also a small improving tendency compared to years after the COVID pandemic. This result can be considered good for a MOOC, especially for one that has quite difficult calculation exercises, which need to be done correctly with limited number of attempts for completing the course. All statistics during the 11 years can be found in the table below.

The participants were very active and asked lots of questions. The questions were often very much to the point and addressed things that are really important to analysts in their everyday work. The course has several forums (general and by topic), and during the course period, the overall number of forum posts was around 300 (!) (overall number of posts, both from participants and from teachers) and the forums are still active and posts are still coming in.

We want to thank all participants for helping to make this course a success!

We plan to repeat this course again in Spring 2025 with a new breath in the course appearance!

Unified pH Scale – from Concept to Applications

On April 16, 2024, prof. Ivo Leito presented the topic of “Unified pH Scale – from Concept to Applications” at the 8th Baltic Electrochemistry Conference: Finding New Inspiration 2 (BEChem 2024), held in Tartu, Estonia. 

At the beginning of the presentation, Ivo gave a brief overview of why pH, a widely used value for expressing acidity, has serious limitations. Thus, it cannot be used to compare the acidities of solutions in different solvents, which can hinder the understanding of chemical, biological, environmental, and industrial processes.

A much more practical approach could be the usage of an absolute/universal pH, which would allow the comparison of acidities in different solvents. Thus, the main part of the presentation was focused on the theoretical and practical aspects of unified pH (pHabs). In recent years, our Acid-base Studies workgroup in the Analytical Chemistry Chair has worked extensively with the development and measurement of unified pH values for various systems in different solvents (liquid chromatography modile phases, electrocatalytic mixtures, strongly acidic solutions, etc). A differential potentiometry method for pHabs has been developed in the workgroup to obtain the unified pH values and has been now distributed to a number of groups in Europe in the framework of the UnipHied project.

For now, the unified pH has matured from a concept into a practical tool and has been accepted both by the European metrology community (Euramet) and by IUPAC. The unified pH could be utilized in various applications, such as liquid chromatography, catalytic systems, and acidity at the interfaces between phases. 

The presented research is largely the result of the EMPIR programme project 17FUN09 “UnipHied” and was additionally supported by grant PRG690 from the Estonian Research Council.

Measurement Uncertainty online course: 1048 participants from 104 countries!

On Tuesday, March 19, 2024, the web course Estimation of Measurement Uncertainty in Chemical Analysis was launched for the eleventh time as a MOOC (Massive Online Open Course)!

Altogether 1048 participants from 104 countries are registered – the largest number of countries the course has ever had! In the map presented above, the yellow color marks the countries from where participants come. True, the map is coarse and some countries are small. Therefore, not all countries are visible. We are very happy, that we have 16 participants also from Ukraine this year. Slava Ukraini!

The entire course material is accessible from the web page https://sisu.ut.ee/measurement/uncertainty. The course materials include videos, schemes, calculation files, and numerous self-tests (among them also full-fledged measurement uncertainty calculation exercises). In order to pass the course, the registered participants have to pass six graded tests and get higher than 50% score from each of them. These tests are available to registered participants via the Moodle e-learning platform.

This course is run under the umbrella of the Estonian Center of Analytical Chemistry (https://www.akki.ee/) and forms a part of the measurements and chemical analysis related master programmes at UT: Applied Measurement Science (https://ams.ut.ee/) and Excellence in Analytical Chemistry (https://www.analyticalchemistry.eu/).

 

Professor Peeter Tulviste Memorial Fund scholarship was awarded to Mari Tõrv

We are happy to announce that Mari Tõrv, Research Fellow in Analytical and Physical Chemistry and Associate Professor of Archaeology at the University of Tartu, was awarded the Professor Peeter Tulviste Memorial Fund scholarship.

Rector Toomas Asser and Dr. Mari Tõrv (photo: Andres Tennus)

Her interdisciplinary research combines archaeological heritage and analytical chemistry to gain insight into people’s past habits and practices. By applying both – humanities and natural sciences – she has improved our knowledge on human diet, diseases, and even funeral rites.

Besides research, she has been part of creating an infrastructure for preserving archaeological heritage digitally, founding the Estonian Association of Archaeologists, and developing the webpage eestijuured.ee to gather and promote the research about the ethnic history of Estonia during the last 11,000 years from the first hunter-gatherers to the digital nomads that we are today. 

For Mari, the scholarship was a great recognition. “The scholarship proves that understanding cultural heritage is important in today’s crisis-torn world because it is the basis of our common identity.” She plans to use this scholarship to research further the culture of death by bringing together the analytical tools from biomolecular archaeology and social theory.

Mari obtained her PhD in archaeology in 2016 with joint supervision from the University of Tartu and the Christian-Albrecht University of Kiel. Since 2017, she has led the Collegium for Transdisciplinary Studies in Archaeology, Genetics, and Linguistics at the University of Tartu. In the Chair of Analytical Chemistry, she is part of the Archemy research group, where her expertise lays on stable isotope analysis of human and animal tissues. 

Read more here from the original post. 

Congratulations, Mari!

The most comprehensive collection of rigorously measured pH values of mobile phases in reversed-phase liquid chromatography

During recent years, we have been engaged in extensive investigations of the unified pH (pHabs) values of reversed-phase liquid chromatography (RPLC) mobile phases. The pHabs scale has the advantage over the conventional pH scale because pHabs values express acidity in terms of the thermodynamic activity of the solvated proton. Therefore, pHabs values are directly comparable between solvents/media of different compositions. At the same time, pHabs is convenient to use, as pHabs values of aqueous solutions are equal to the respective conventional pH values.

This comparability is especially useful in RPLC, as mobile phases are mixtures of water with organic solvents in different ratios. Thus, it can be said that pHabs is the best way of expressing pH if a rigorous comparison of pH between solutions in different solvents is needed.

As a result of our work, we have carefully measured the pHabs values of 78 mobile phases commonly used in RPLC, using around 300 individual ΔpHabs measurements between different mobile phases (see the “ladder” scheme below). This is, to the best of our knowledge, the most comprehensive collection of rigorous pHabs values of RPLC mobile phases and has now been published as A. Heering, M. Lahe, M. Vilbaste, J. Saame, J. P. Samin, I. Leito. Improved pH measurement of mobile phases in reversed-phase liquid chromatography. Analyst 2024.

The ΔpHabs values were measured by differential potentiometry, using potential differences in a symmetric cell with two glass electrode half-cells (see figure above) and almost ideal ionic liquid triethylamylammonium bis((trifluoromethyl)sulfonyl)imide [N2225][NTf2] salt bridge with multiple overlapping measurements. The system of altogether 300 ΔpH values, pictured in the “ladder” scheme below, was anchored to the pH value of standard pH 7.00 aqueous buffer solution.

In addition, a simpler measurement method that uses double junction reference or double junction combined electrodes was tested and was found suitable for routine laboratories. The results show that the design of the junction is an important factor in deciding if the electrode can be used for unified acidity measurements. This is the first successful use of double junction combined electrodes filled with ionic liquid for the measurement of pHabs values.

The article is featured in the themed collection Analyst HOT Articles 2024.

(This research was supported by grant PRG690 from the Estonian Research Council)